Assuming that the entire hide away headlight housing itself is sitting correctly (all bushings in place, etc), the painted part of the outer door can be adjusted, slightly, by loosening the two screws shown in the pics. Allows some freedom to align the door with the fender and valance cutouts - and prevent rubbing.
If it is rubbing "hard", check to be sure that all of the bushings are in place on the main shaft of the door assembly. They are simply plastic items and can wear through and fall out. When I went through my headlignts a year ago, the bottom bushings on both sides were completely gone. Mine weren't rubbing, but were, at times hard to open or close.